Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs200658737 | chr7:76230854 | T/C | 1.19E-10 | 409 | 16.35 | 14.77 | 3.95 | KM Plot |
| HNSC | rs201026203 | chr6:74346017 | AAAAAAC/A | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs201090889 | chr22:31008232 | TA/TAA | 2.98E-5 | 399 | 16.68 | 14.43 | 6.75 | KM Plot |
| HNSC | rs201119706 | chr1:173831610 | C/CA | 2.33E-6 | 410 | 16.68 | 14.77 | 3.73 | KM Plot |
| HNSC | rs201248393 | chr6:74343660 | G/A | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs202158918 | chr6:74343661 | T/G | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs2051199 | chr22:24465845 | A/G | 3.18E-6 | 407 | 8.63 | 17.07 | 16.27 | KM Plot |
| HNSC | rs2066987 | chr5:76856617 | T/A | 1.29E-8 | 406 | 16.33 | 19.07 | 4.55 | KM Plot |
| HNSC | rs2157591 | chr22:42348094 | G/C | 7.45E-5 | 407 | 16.23 | 17.07 | 9.4 | KM Plot |
| HNSC | rs2272003 | chr10:16763696 | C/T | 9.54E-9 | 412 | 16.43 | 15.85 | 2.97 | KM Plot |
| HNSC | rs2330722 | chr22:24491488 | C/G | 2.12E-6 | 411 | 8.63 | 17.07 | 16.33 | KM Plot |
| HNSC | rs234810 | chr17:33201618 | A/G | 3.3E-5 | 412 | 14.27 | 16.33 | 22.42 | KM Plot |
| HNSC | rs234811 | chr17:33201866 | A/C | 7.72E-5 | 410 | 14.28 | 16.35 | 22.42 | KM Plot |
| HNSC | rs234823 | chr17:33152135 | T/C | 4.82E-5 | 406 | 14.7 | 16.5 | 21.32 | KM Plot |
| HNSC | rs234824 | chr17:33153319 | C/G | 6.39E-5 | 412 | 14.87 | 16.35 | 21.47 | KM Plot |